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肾脏病与透析肾移植杂志 ›› 2025, Vol. 34 ›› Issue (2): 138-146.DOI: 10.3969/j.issn.1006-298X.2025.02.007

• 论著 • 上一篇    下一篇

人永生化足细胞和活体足细胞的基因表达差异及其遗传修正

  

  • 出版日期:2025-04-28 发布日期:2025-05-07

Differential gene expression in human immortalized podocytes compared with the podocytes in vivo and the genetic correction

  • Online:2025-04-28 Published:2025-05-07

摘要: 目的:阐明永生化足细胞与活体足细胞的基因表达差异。
方法:本研究基于人类活体足细胞的单细胞RNA测序数据库以及我们对人永生化足细胞的RNA测序,比对两者基因表达谱以发现差异表达的基因。为修正人永生化足细胞的基因变化,体外足细胞转染WT1质粒,用qPCR检测足细胞特有基因的变化。
结果:人永生化足细胞和活体足细胞的基因表达存在巨大差异,两者相关性极低(R=0.11,P<2.2×10-16)。维持足细胞结构和功能的基因及主要标志物基因(包括足细胞主调控因子WT1)表达在人永生化足细胞中基本丧失,提示本研究领域通用的人永生化足细胞可能并非理想研究工具。对在人永生化足细胞中下调的230个基因的互作网络分析显示WT1是核心枢纽节点,提示人永生化足细胞中足细胞特异基因表达的丧失可能是由于WT1表达的显著下调所致。外源性WT1过表达结果显示部分足细胞特异基因,NPHS1、CLIC5、PODXL、IQGAP2、ROBO2及PTPRO的表达显著上调。
结论:永生化足细胞和活体足细胞的基因表达存在巨大差异,并非可靠的体外实验模型;通过表达外源WT1可使人永生化足细胞更加接近活体足细胞,有望获得更可靠的结果。


关键词: 永生化足细胞, 活体足细胞, 基因表达

Abstract: Objective:To elucidate pathophysiology of podocytes for prevention and treatment of podocytopathies by human immortalized podocytes.
Methodology:We compare their gene expression profiles based on single-cell RNA-seq databases and the RNA-seq data generated by ourselves to identify differentially expressed genes.
Results:There are enormous differences of gene expression between immortalized human podocytes and those in vivo(R=0.11,P<2.2×10-16). Particularly, expressions of the genes and markers that are known to be essential for structure and function of podocytes are mostly lost in the human immortalized podocyte cells, including WT1, the master transcription factor that determines podocyte development, differentiation and maturation. We speculate that the marked downregulation of WT1 in the immortalized cells underlies expression loss of majority of podocyte-specific genes. We then express exogenous WT1 in the cells using plasmid transfection, and found expression restoration of some podocyte-specific genes.
Conclusion:The human immortalized podocytes and the podocytes in vivo differ greatly in gene expression, making the former not a reliable tool for in vitro studies. However, exogenous WT1 expression can restore expression of some podocyte specific genes, resulting in cells closer to the podocytes in vivo and more reliable experimental data.


Key words: immortalized podocytes, podocytes in vivo, gene expression